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hmmgen |
This package is still being developed.
Please ignore this program until further details can be documented.
All further queries should go to Jon Ison. (Jon Ison)
% hmmgen
EMBOSS An error in ajacd.c at line 1531: acdfile '/packages/emboss_dev/gwilliam/emboss/emboss/emboss/acd/hmmgen.acd' not opened |
EMBOSS An error in ajacd.c at line 1531: acdfile '/packages/emboss_dev/gwilliam/emboss/emboss/emboss/acd/hmmgen.acd' not opened
| Program name | Description |
|---|---|
| contacts | Reads coordinate files and writes files of intra-chain residue-residue contact data |
| dichet | Parse dictionary of heterogen groups |
| fraggle | Removes fragment sequences from files of hits for scop families |
| interface | Reads coordinate files and writes files of inter-chain residue-residue contact data |
| profgen | Generates various profiles for each alignment in a directory |
| psiblasts | Runs PSI-BLAST given scopalign alignments |
| scopalign | Generate alignments for families in a scop classification file by using STAMP |
| scoprep | Reorder scop classificaiton file so that the representative structure of each family is given first |
| scopreso | Removes low resolution domains from a scop classification file |
| seqalign | Generate extended alignments for families in a scop families file by using CLUSTALW with seed alignments |
| seqsearch | Generate files of hits for families in a scop classification file by using PSI-BLAST with seed alignments |
| seqsort | Reads multiple files of hits and writes (i) a scop families file and (ii) a scop ambiguities file |
| seqwords | Generate file of hits for scop families by searching swissprot with keywords |
| siggen | Generates a sparse protein signature from an alignment and residue contact data |
| sigscan | Scans a signature against swissprot and writes a signature hits file |